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VEP run statistics

VEP version (API) 110 (110)
Annotation sourcesCache: /home/w/wwolfsberger/vep_data/homo_sapiens/110_GRCh38
Specieshomo_sapiens
Command line options
--cache  --dir /home/w/wwolfsberger/vep_data --everything --flag_pick_allele --fork 4 --input_file /home/w/wwolfsberger/OU2k_dbSNP_Clinvar.vcf.gz --offline --output_file STDOUT --tab
Start time2023-10-27 23:36:45
End time2023-10-28 01:57:39
Run time8454 seconds
Input file/home/w/wwolfsberger/OU2k_dbSNP_Clinvar.vcf.gz
Output fileSTDOUT

General statistics

Lines of input read2649460
Variants processed2649460
Variants filtered out0
Novel / existing variants404780 (15.3) / 2244680 (84.7)
Overlapped genes57522
Overlapped transcripts244437
Overlapped regulatory features143437

Variant classes

 
 

Consequences (most severe)

 
 

Consequences (all)

 
 

Coding consequences

 
 

SIFT summary

 
 

PolyPhen summary

 
 

Variants by chromosome

 
 

Distribution of variants on chromosome 1

 

Distribution of variants on chromosome 10

 

Distribution of variants on chromosome 11

 

Distribution of variants on chromosome 12

 

Distribution of variants on chromosome 13

 

Distribution of variants on chromosome 14

 

Distribution of variants on chromosome 15

 

Distribution of variants on chromosome 16

 

Distribution of variants on chromosome 17

 

Distribution of variants on chromosome 18

 

Distribution of variants on chromosome 19

 

Distribution of variants on chromosome 2

 

Distribution of variants on chromosome 20

 

Distribution of variants on chromosome 21

 

Distribution of variants on chromosome 22

 

Distribution of variants on chromosome 3

 

Distribution of variants on chromosome 4

 

Distribution of variants on chromosome 5

 

Distribution of variants on chromosome 6

 

Distribution of variants on chromosome 7

 

Distribution of variants on chromosome 8

 

Distribution of variants on chromosome 9

 

Distribution of variants on chromosome X

 

Distribution of variants on chromosome Y

 

Position in protein